Crystal Structure of F-93 from Sulfolobus Spindle-Shaped Virus 1, a Winged-Helix DNA Binding Protein
Paul Kraft, Andrea Oeckinghaus, Daniel Kümmel, George H. Gauss, John Gilmore,
Blake Wiedenheft, Mark Young, and C. Martin Lawrence
Journal of Virology, 2004
Abstract
Sulfolobus spindle-shaped viruses (SSVs), or Fuselloviridae, are ubiquitous crenarchaeal viruses found in
high-temperature acidic hot springs around the world (pH <4.0; temperature of >70°C). Because they are
relatively easy to isolate, they represent the best studied of the crenarchaeal viruses. This is particularly true
for the type virus, SSV1, which contains a double-stranded DNA genome of 15.5 kilobases, encoding 34 putative
open reading frames. Interestingly, the genome shows little sequence similarity to organisms other than its SSV
homologues. Together, sequence similarity and biochemical analyses have suggested functions for only 6 of the
34 open reading frames. Thus, even though SSV1 is the best-studied crenarchaeal virus, functions for most (28)
of its open reading frames remain unknown. We have undertaken biochemical and structural studies for the
gene product of open reading frame F-93. We find that F-93 exists as a homodimer in solution and that a tight
dimer is also present in the 2.7-A° crystal structure. Further, the crystal structure reveals a fold that is
homologous to the SlyA and MarR subfamilies of winged-helix DNA binding proteins. This strongly suggests
that F-93 functions as a transcription factor that recognizes a (pseudo-)palindromic DNA target sequence.
NOTE: the article text supplied here is for educational purposes only.
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